Transcript: ENSDART00000162039.2 slbp-202

Description

stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]

Gene Synonyms

cb157, sb:cb157, si:dkey-102m7.2

Location

About this transcript

This transcript has 7 exons, is annotated with 13 domains and features, is associated with 35 variant alleles and maps to 164 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158291.2	slbp-201	1331	302aa	ENSDARP00000140437.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IVR7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162039.2	slbp-202	985	254aa	ENSDARP00000141903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IZV7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000170831.2	slbp-203	645	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 985 bps, Translation length: 254 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000162039.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.