Transcript: ENSDART00000161897.2 ABCC1-201

Description

ATP binding cassette subfamily C member 1 (ABCC1 blood group) [Source:ZFIN;Acc:ZDB-GENE-050517-15]

Location

Chromosome 3: 36,713,482-36,743,962 forward strand.

About this transcript

This transcript has 31 exons, is annotated with 83 domains and features, is associated with 411 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104719.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000161897.2	ABCC1-201	6178	1518aa	ENSDARP00000130505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IC81	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000189952.1	ABCC1-203	4497	1498aa	ENSDARP00000157625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181105.1	ABCC1-204	4125	1333aa	ENSDARP00000155836.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000170707.2	ABCC1-202	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 31, Coding exons: 31, Transcript length: 6,178 bps, Translation length: 1,518 residues

Version

ENSDART00000161897.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000161897.2 ABCC1-201

Summary

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Transcript: ENSDART00000161897.2 ABCC1-201

Summary

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