Transcript: ENSDART00000161770.2 CPNE9-202

Description

copine family member IX [Source:ZFIN;Acc:ZDB-GENE-090311-49]

Location

Chromosome 23: 35,259,878-35,347,714 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 14 domains and features, is associated with 887 variant alleles and maps to 55 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000098252.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000165615.3	CPNE9-203	1632	543aa	ENSDARP00000136079.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000161770.2	CPNE9-202	881	293aa	ENSDARP00000140341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000161003.2	CPNE9-201	775	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 881 bps, Translation length: 293 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000161770.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000161770.2 CPNE9-202

Summary

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Transcript: ENSDART00000161770.2 CPNE9-202

Summary

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