Transcript: ENSDART00000161685.2 zgc:171901-203

Description

zgc:171901 [Source:ZFIN;Acc:ZDB-GENE-080220-13]

Location

Chromosome 15: 673,737-684,911 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 60 domains and features, is associated with 531 variant alleles and maps to 93 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074365.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000115375.5	zgc:171901-201	2016	381aa	ENSDARP00000101300.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WFV9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000161685.2	zgc:171901-203	1643	387aa	ENSDARP00000140334.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000156148.2	zgc:171901-202	810	169aa	ENSDARP00000129558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,643 bps, Translation length: 387 residues

Version

ENSDART00000161685.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000161685.2 zgc:171901-203

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Transcript: ENSDART00000161685.2 zgc:171901-203

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