Transcript: ENSDART00000161567.2 KCNT1-201

Description

si:dkey-21e5.1 [Source:ZFIN;Acc:ZDB-GENE-141210-6]

Location

Chromosome 5: 65,493,699-65,596,478 forward strand.

About this transcript

This transcript has 28 exons, is annotated with 21 domains and features, is associated with 522 variant alleles and maps to 136 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104868.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000161567.2	KCNT1-201	3385	1128aa	ENSDARP00000130079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IBC0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000162804.2	KCNT1-204	3363	1120aa	ENSDARP00000130242.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IAI5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000159921.2	KCNT1-202	3321	1106aa	ENSDARP00000135924.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4INH1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000189898.1	KCNT1-203	2037	678aa	ENSDARP00000149670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QD50	-

Summary

Statistics

Exons: 28, Coding exons: 28, Transcript length: 3,385 bps, Translation length: 1,128 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000161567.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000161567.2 KCNT1-201

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Transcript: ENSDART00000161567.2 KCNT1-201

Summary

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