Transcript: ENSDART00000161481.2 opn1sw2-202

Description

opsin 1 (cone pigments), short-wave-sensitive 2 [Source:ZFIN;Acc:ZDB-GENE-990604-40]

Gene Synonyms

SI:zK13A21.5, SWS2, bluops, zfblue

Location

About this transcript

This transcript has 6 exons, is annotated with 32 domains and features, is associated with 442 variant alleles and maps to 148 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000011178.9	opn1sw2-201	1413	354aa	ENSDARP00000019477.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E5J4 Q9W6A8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000161481.2	opn1sw2-202	888	226aa	ENSDARP00000137216.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 888 bps, Translation length: 226 residues

Version

ENSDART00000161481.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]