Transcript: ENSDART00000161201.2 limch1b-202

Description

LIM and calponin homology domains 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9210]

Location

Chromosome 14: 16,813,816-17,027,395 forward strand.

About this transcript

This transcript has 26 exons, is annotated with 44 domains and features, is associated with 1977 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103774.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000161201.2	limch1b-202	5500	1020aa	ENSDARP00000134427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IJJ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000167856.2	limch1b-204	806	124aa	ENSDARP00000139706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000170208.2	limch1b-205	613	204aa	ENSDARP00000134200.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000163013.2	limch1b-203	604	86aa	ENSDARP00000137354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000159796.2	limch1b-201	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 5,500 bps, Translation length: 1,020 residues

Version

ENSDART00000161201.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000161201.2 limch1b-202

Summary

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Transcript: ENSDART00000161201.2 limch1b-202

Summary

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