Transcript: ENSDART00000160605.2 si:ch73-338d8.1-202

Description

si:ch73-338d8.1 [Source:ZFIN;Acc:ZDB-GENE-141219-45]

Location

Chromosome 22: 14,223,121-14,247,242 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 563 variant alleles and maps to 5 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103750.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000190121.1	si:ch73-338d8.1-205	5233	1384aa	ENSDARP00000148759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000033332.8	si:ch73-338d8.1-201	1827	609aa	ENSDARP00000033391.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000168264.2	si:ch73-338d8.1-204	414	138aa	ENSDARP00000137007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000167088.2	si:ch73-338d8.1-203	316	106aa	ENSDARP00000140705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000160605.2	si:ch73-338d8.1-202	372	85aa	ENSDARP00000137681.1	Nonsense mediated decay	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 372 bps, Translation length: 85 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000160605.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000160605.2 si:ch73-338d8.1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000160605.2 si:ch73-338d8.1-202

Summary

About Us

Get help

Our sister sites

Follow us