Transcript: ENSDART00000160552.2 si:ch211-8c17.2-202

Description

si:ch211-8c17.2 [Source:ZFIN;Acc:ZDB-GENE-091204-254]

Location

Chromosome 3: 12,828,824-12,831,327 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 222 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000098570.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000157672.2	si:ch211-8c17.2-201	1605	322aa	ENSDARP00000139483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IVQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000160552.2	si:ch211-8c17.2-202	856	285aa	ENSDARP00000132187.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IFS7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 856 bps, Translation length: 285 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000160552.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000160552.2 si:ch211-8c17.2-202

Summary

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Transcript: ENSDART00000160552.2 si:ch211-8c17.2-202

Summary

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