Transcript: ENSDART00000160545.2 cib1-201

Description

calcium and integrin binding 1 (calmyrin) [Source:ZFIN;Acc:ZDB-GENE-050417-170]

Gene Synonyms

zgc:112015

Location

About this transcript

This transcript has 7 exons, is annotated with 16 domains and features, is associated with 87 variant alleles and maps to 123 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160545.2	cib1-201	1232	188aa	ENSDARP00000138487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ITL7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000165924.2	cib1-203	580	154aa	ENSDARP00000132003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IBF2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000165007.2	cib1-202	609	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,232 bps, Translation length: 188 residues

Version

ENSDART00000160545.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.