Transcript: ENSDART00000160488.2 itgb6-202

Description

integrin, beta 6 [Source:ZFIN;Acc:ZDB-GENE-100812-2]

Gene Synonyms

im:7165241

Location

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 639 variant alleles and maps to 47 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000065933.6	itgb6-201	2988	782aa	ENSDARP00000065932.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGX0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192872.1	itgb6-203	5096	782aa	ENSDARP00000153217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGX0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000160488.2	itgb6-202	847	216aa	ENSDARP00000136814.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IP79	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 847 bps, Translation length: 216 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000160488.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.