Transcript: ENSDART00000160412.2 nrxn1a-206

Description

neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]

Location

Chromosome 12: 24,342,331-24,345,493 forward strand.

About this transcript

This transcript has 2 exons, is associated with 137 variant alleles and maps to 55 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000061647.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000088159.5	nrxn1a-202	3069	449aa	ENSDARP00000082592.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1XQX1-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000189696.1	nrxn1a-208	9682	1481aa	ENSDARP00000152871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QKE7	-
ENSDART00000088178.7	nrxn1a-203	9670	1477aa	ENSDARP00000082611.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000191648.1	nrxn1a-209	9649	1470aa	ENSDARP00000151175.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000183180.1	nrxn1a-207	9643	1468aa	ENSDARP00000154048.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000093094.7	nrxn1a-204	7007	1484aa	ENSDARP00000087526.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140TAU1	-
ENSDART00000111239.4	nrxn1a-205	6457	1491aa	ENSDARP00000102322.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1XQX0-1	-
ENSDART00000056256.6	nrxn1a-201	1425	419aa	ENSDARP00000056255.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6EUL5	-
ENSDART00000160412.2	nrxn1a-206	906	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 906 bps,

Version

ENSDART00000160412.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000160412.2 nrxn1a-206

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Transcript: ENSDART00000160412.2 nrxn1a-206

Summary

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