Transcript: ENSDART00000160305.2 si:zfos-943e10.1-201

Description

si:zfos-943e10.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5694]

Location

Chromosome 22: 3,263,428-3,299,100 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 19 domains and features, is associated with 897 variant alleles and maps to 104 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103522.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160305.2	si:zfos-943e10.1-201	1772	408aa	ENSDARP00000132910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000190993.1	si:zfos-943e10.1-204	3135	394aa	ENSDARP00000146657.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000170992.2	si:zfos-943e10.1-203	1733	348aa	ENSDARP00000130548.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4I9T5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000164743.2	si:zfos-943e10.1-202	347	99aa	ENSDARP00000141575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,772 bps, Translation length: 408 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000160305.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000160305.2 si:zfos-943e10.1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000160305.2 si:zfos-943e10.1-201

Summary

About Us

Get help

Our sister sites

Follow us