Transcript: ENSDART00000159997.2 cacna1ab-206

Description

calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b [Source:ZFIN;Acc:ZDB-GENE-090514-3]

Gene Synonyms

fakir, far, unm tb204, unm_tb204

Location

Chromosome 11: 30,817,943-31,026,335 forward strand.

About this transcript

This transcript has 47 exons, is annotated with 90 domains and features, is associated with 3622 variant alleles and maps to 108 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000006923.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000159997.2	cacna1ab-206	8383	2319aa	ENSDARP00000133186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IFN9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000150130.3	cacna1ab-205	6843	2280aa	ENSDARP00000124309.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3Z0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000148949.2	cacna1ab-201	829	276aa	ENSDARP00000123793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W536	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149597.2	cacna1ab-203	728	243aa	ENSDARP00000124886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W631	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149943.2	cacna1ab-204	808	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000149273.2	cacna1ab-202	714	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 47, Coding exons: 47, Transcript length: 8,383 bps, Translation length: 2,319 residues

Version

ENSDART00000159997.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

Transcript: ENSDART00000159997.2 cacna1ab-206

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Transcript: ENSDART00000159997.2 cacna1ab-206

Summary

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