Transcript: ENSDART00000159679.2 nolc1-203

Description

nucleolar and coiled-body phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6349]

Location

About this transcript

This transcript has 9 exons, is associated with 708 variant alleles and maps to 63 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102651.5	nolc1-201	3839	1001aa	ENSDARP00000093426.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JIY2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132931.2	nolc1-202	1033	175aa	ENSDARP00000121596.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000168465.2	nolc1-204	359	120aa	ENSDARP00000141453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000159679.2	nolc1-203	783	203aa	ENSDARP00000134062.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 783 bps, Translation length: 203 residues

Version

ENSDART00000159679.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.