Transcript: ENSDART00000159577.2 si:ch73-171o20.1-201

Description

si:ch73-171o20.1 [Source:ZFIN;Acc:ZDB-GENE-140106-80]

Location

About this transcript

This transcript has 3 exons, is annotated with 16 domains and features, is associated with 254 variant alleles and maps to 125 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000159577.2	si:ch73-171o20.1-201	1674	401aa	ENSDARP00000139527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000187771.1	si:ch73-171o20.1-202	3683	400aa	ENSDARP00000147654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q1M9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,674 bps, Translation length: 401 residues

Version

ENSDART00000159577.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.