Transcript: ENSDART00000159274.2 SF3B3-201

Description

splicing factor 3b, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2901]

Location

About this transcript

This transcript has 27 exons, is annotated with 11 domains and features, is associated with 748 variant alleles and maps to 203 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000159274.2	SF3B3-201	4437	1217aa	ENSDARP00000134109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVE8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191973.1	SF3B3-203	8009	1217aa	ENSDARP00000153577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVE8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162263.2	SF3B3-202	839	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 4,437 bps, Translation length: 1,217 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q1LVE8

Version

ENSDART00000159274.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.