Transcript: ENSDART00000159219.2 si:dkey-264f17.5-201

Description

si:dkey-264f17.5 [Source:ZFIN;Acc:ZDB-GENE-120703-23]

Location

Chromosome 4: 68,859,666-68,868,229 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 41 domains and features, is associated with 66 variant alleles and maps to 549 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104502.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000159219.2	si:dkey-264f17.5-201	3328	1058aa	ENSDARP00000136635.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000184297.1	si:dkey-264f17.5-203	4095	185aa	ENSDARP00000152483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000187985.1	si:dkey-264f17.5-204	3187	674aa	ENSDARP00000155196.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000163087.2	si:dkey-264f17.5-202	2962	733aa	ENSDARP00000130190.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PWH2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,328 bps, Translation length: 1,058 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000159219.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000159219.2 si:dkey-264f17.5-201

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Transcript: ENSDART00000159219.2 si:dkey-264f17.5-201

Summary

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