Transcript: ENSDART00000158992.2 stx12-201

Description

syntaxin 12 [Source:ZFIN;Acc:ZDB-GENE-040625-11]

Gene Synonyms

zgc:86632

Location

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 9 variant alleles and maps to 108 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000169993.2	stx12-203	1814	267aa	ENSDARP00000131485.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000158992.2	stx12-201	1801	267aa	ENSDARP00000136016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMJ7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000161325.2	stx12-202	365	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,801 bps, Translation length: 267 residues

Version

ENSDART00000158992.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.