Transcript: ENSDART00000158834.2 si:ch211-227e10.6-201

Description

si:ch211-227e10.6 [Source:ZFIN;Acc:ZDB-GENE-050420-355]

Location

Chromosome 4: 54,480,250-54,504,217 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 40 domains and features, is associated with 67 variant alleles and maps to 452 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000102215.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158834.2	si:ch211-227e10.6-201	3720	1121aa	ENSDARP00000141435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000183010.1	si:ch211-227e10.6-203	2895	964aa	ENSDARP00000147294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q3L4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000162477.2	si:ch211-227e10.6-202	462	96aa	ENSDARP00000135299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IN13	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 3,720 bps, Translation length: 1,121 residues

Version

ENSDART00000158834.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000158834.2 si:ch211-227e10.6-201

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Transcript: ENSDART00000158834.2 si:ch211-227e10.6-201

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