Transcript: ENSDART00000158442.2 MAP7D1-202

Description

MAP7 domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-060503-22]

Location

Chromosome 16: 35,728,992-35,750,645 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 220 variant alleles and maps to 28 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000098802.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000161725.3	MAP7D1-203	6453	771aa	ENSDARP00000136038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IPE8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000161393.2	MAP7D1-201	3160	770aa	ENSDARP00000132764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IEP5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000158442.2	MAP7D1-202	687	229aa	ENSDARP00000135930.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 687 bps, Translation length: 229 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000158442.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000158442.2 MAP7D1-202

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Transcript: ENSDART00000158442.2 MAP7D1-202

Summary

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