Transcript: ENSDART00000158192.2 ppt2b-201

Description

palmitoyl-protein thioesterase 2b [Source:NCBI gene (formerly Entrezgene);Acc:100126133]

Location

Chromosome 19: 18,847,424-18,855,717 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 340 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104542.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158192.2	ppt2b-201	1680	287aa	ENSDARP00000133912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KPZ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000162708.2	ppt2b-203	1872	298aa	ENSDARP00000138345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000158805.2	ppt2b-202	332	59aa	ENSDARP00000133965.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,680 bps, Translation length: 287 residues

Version

ENSDART00000158192.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000158192.2 ppt2b-201

Summary

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Transcript: ENSDART00000158192.2 ppt2b-201

Summary

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