Transcript: ENSDART00000158151.3 parapinopsinb-202

Description

parapinopsin b [Source:ZFIN;Acc:ZDB-GENE-030616-134]

Gene Synonyms

opsin, parapinopsin-2, si:busm1-136d19.2, si:dz136d19.2

Location

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 451 variant alleles and maps to 75 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158151.3	parapinopsinb-202	2056	339aa	ENSDARP00000141859.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IYG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000065644.4	parapinopsinb-201	969	322aa	ENSDARP00000065643.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JFR3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,056 bps, Translation length: 339 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000158151.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]