Transcript: ENSDART00000158087.2 SCARB1-204

Description

scavenger receptor class B, member 1 [Source:ZFIN;Acc:ZDB-GENE-031126-1]

Location

Chromosome 10: 44,719,697-44,745,966 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 827 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000101557.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167952.2	SCARB1-203	2598	496aa	ENSDARP00000137986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IRL8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190188.1	SCARB1-207	6606	522aa	ENSDARP00000152539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000158681.3	SCARB1-206	4451	505aa	ENSDARP00000137618.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQE0	-
ENSDART00000168276.2	SCARB1-205	4412	492aa	ENSDARP00000131702.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IDW0	-
ENSDART00000158087.2	SCARB1-204	773	149aa	ENSDARP00000130287.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000165999.2	SCARB1-201	436	111aa	ENSDARP00000130139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000169466.2	SCARB1-202	844	96aa	ENSDARP00000133293.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 773 bps, Translation length: 149 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000158087.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000158087.2 SCARB1-204

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000158087.2 SCARB1-204

Summary

About Us

Get help

Our sister sites

Follow us