Transcript: ENSDART00000157844.2 HSPG2-201

Description

heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-080807-4]

Location

Chromosome 23: 26,543,716-26,725,637 reverse strand.

About this transcript

This transcript has 79 exons, is annotated with 237 domains and features, is associated with 4231 variant alleles and maps to 251 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000076564.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000157844.2	HSPG2-201	10833	3462aa	ENSDARP00000141317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000111029.3	HSPG2-203	10260	3419aa	ENSDARP00000100979.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000112124.5	HSPG2-202	10194	3397aa	ENSDARP00000104137.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 79, Coding exons: 79, Transcript length: 10,833 bps, Translation length: 3,462 residues

Version

ENSDART00000157844.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000157844.2 HSPG2-201

Summary

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Transcript: ENSDART00000157844.2 HSPG2-201

Summary

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