Transcript: ENSDART00000157844.2 hspg2-203

Description

heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-080807-4]

Gene Synonyms

perlecan

Location

Chromosome 23: 26,543,716-26,725,637 reverse strand.

About this transcript

This transcript has 79 exons, is annotated with 260 domains and features, is associated with 4233 variant alleles and maps to 251 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000076564.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000157844.2	hspg2-203	10833	3462aa	ENSDARP00000141317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IZA6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000111029.3	hspg2-201	10260	3419aa	ENSDARP00000100979.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCP6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000112124.5	hspg2-202	10194	3397aa	ENSDARP00000104137.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5K7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 79, Coding exons: 79, Transcript length: 10,833 bps, Translation length: 3,462 residues

Version

ENSDART00000157844.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000157844.2 hspg2-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000157844.2 hspg2-203

Summary

About Us

Get help

Our sister sites

Follow us