Transcript: ENSDART00000157769.2 pcdh1gc5-201

Description

protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]

Gene Synonyms

DrPcdh1g23, pcdh1g27, pcdh1gc5-A, pcdh1gc5-sCP1, pcdh1gc5-sCP1-2, pcdh1gc5-sCP2

Location

About this transcript

This transcript has 4 exons, is annotated with 68 domains and features, is associated with 384 variant alleles and maps to 223 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000171703.2	pcdh1gc5-202	4451	966aa	ENSDARP00000141693.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000157769.2	pcdh1gc5-201	4345	948aa	ENSDARP00000134484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1N488	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,345 bps, Translation length: 948 residues

Version

ENSDART00000157769.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.