Transcript: ENSDART00000157619.2 litaf-201

Description

lipopolysaccharide-induced TNF factor [Source:ZFIN;Acc:ZDB-GENE-040704-23]

Location

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features, is associated with 311 variant alleles and maps to 225 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000157619.2	litaf-201	2247	163aa	ENSDARP00000130720.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6GMG8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000166197.2	litaf-203	787	128aa	ENSDARP00000137959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000165145.2	litaf-202	304	75aa	ENSDARP00000130545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,247 bps, Translation length: 163 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6GMG8

Version

ENSDART00000157619.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.