Transcript: ENSDART00000157580.2 ubfd1-201

Description

ubiquitin family domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050506-90]

Gene Synonyms

im:6905175, zgc:162578

Location

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 318 variant alleles and maps to 52 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167159.2	ubfd1-203	1237	279aa	ENSDARP00000137446.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNV8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000189315.1	ubfd1-204	1446	279aa	ENSDARP00000146521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNV8	-
ENSDART00000161582.2	ubfd1-202	1046	290aa	ENSDARP00000133491.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000157580.2	ubfd1-201	673	153aa	ENSDARP00000140716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 673 bps, Translation length: 153 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000157580.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.