Transcript: ENSDART00000157498.2 hif1al-201

Description

hypoxia inducible factor 1 subunit alpha, like [Source:ZFIN;Acc:ZDB-GENE-040426-1315]

Gene Synonyms

Hif3a, hif-3, zgc:63965

Location

Chromosome 15: 25,504,930-25,527,581 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 545 variant alleles and maps to 74 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000100826.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167005.2	hif1al-203	3185	626aa	ENSDARP00000132400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IBR4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000158594.2	hif1al-202	5161	619aa	ENSDARP00000129996.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IB28	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000157498.2	hif1al-201	900	221aa	ENSDARP00000137924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IRI4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 900 bps, Translation length: 221 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000157498.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000157498.2 hif1al-201

Summary

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Transcript: ENSDART00000157498.2 hif1al-201

Summary

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