Transcript: ENSDART00000157334.2 SNX20-203

Description

sorting nexin 20 [Source:ZFIN;Acc:ZDB-GENE-100806-1]

Location

About this transcript

This transcript has 5 exons, is associated with 258 variant alleles and maps to 93 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000153612.3	SNX20-201	1213	309aa	ENSDARP00000127957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2BA68	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000073434.6	SNX20-204	846	281aa	ENSDARP00000067925.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000157334.2	SNX20-203	703	35aa	ENSDARP00000129686.1	Nonsense mediated decay	-	-
ENSDART00000153919.2	SNX20-202	854	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 703 bps, Translation length: 35 residues

Version

ENSDART00000157334.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.