Transcript: ENSDART00000156836.2 si:dkey-7j14.6-204

Description

si:dkey-7j14.6 [Source:ZFIN;Acc:ZDB-GENE-030131-8466]

Location

Chromosome 16: 43,028,547-43,041,355 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features, is associated with 273 variant alleles and maps to 130 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000090552.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154945.3	si:dkey-7j14.6-202	1348	221aa	ENSDARP00000128657.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FD05	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000155445.3	si:dkey-7j14.6-203	1121	187aa	ENSDARP00000128486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000156836.2	si:dkey-7j14.6-204	771	216aa	ENSDARP00000127997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000153582.2	si:dkey-7j14.6-201	860	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 771 bps, Translation length: 216 residues

Version

ENSDART00000156836.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000156836.2 si:dkey-7j14.6-204

Summary

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Transcript: ENSDART00000156836.2 si:dkey-7j14.6-204

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