Transcript: ENSDART00000156505.2 tmprss5-202

Description

transmembrane serine protease 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]

Location

Chromosome 15: 18,164,054-18,177,124 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 25 domains and features, is associated with 536 variant alleles and maps to 62 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000087717.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000189840.1	tmprss5-203	1749	582aa	ENSDARP00000149114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000156505.2	tmprss5-202	2507	551aa	ENSDARP00000127719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WBX7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000155872.2	tmprss5-201	736	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,507 bps, Translation length: 551 residues

Version

ENSDART00000156505.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENSDART00000156505.2 tmprss5-202

Summary

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Transcript: ENSDART00000156505.2 tmprss5-202

Summary

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