Transcript: ENSDART00000156472.3 b4galnt2.2-203

Description

beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group), tandelm duplication 2 [Source:ZFIN;Acc:ZDB-GENE-130530-731]

Location

Chromosome 3: 23,045,222-23,050,844 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 7 domains and features, is associated with 71 variant alleles and maps to 30 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070605.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000103858.5	b4galnt2.2-201	2881	482aa	ENSDARP00000094634.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000157090.3	b4galnt2.2-204	1659	476aa	ENSDARP00000127995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WCP8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000156472.3	b4galnt2.2-203	794	202aa	ENSDARP00000128536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000155792.2	b4galnt2.2-202	663	200aa	ENSDARP00000127904.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 794 bps, Translation length: 202 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000156472.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000156472.3 b4galnt2.2-203

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Transcript: ENSDART00000156472.3 b4galnt2.2-203

Summary

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