Transcript: ENSDART00000156303.2 VPS39-201

Description

VPS39 subunit of HOPS complex [Source:ZFIN;Acc:ZDB-GENE-080530-2]

Location

About this transcript

This transcript has 23 exons, is annotated with 8 domains and features, is associated with 981 variant alleles and maps to 157 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000113644.4	VPS39-202	6807	875aa	ENSDARP00000100792.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156303.2	VPS39-201	2601	851aa	ENSDARP00000129254.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 2,601 bps, Translation length: 851 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000156303.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.