Transcript: ENSDART00000155754.3 smg9-202

Description

SMG9 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9385]

Gene Synonyms

fj67f05, si:dkey-79d12.3, wu:fj67f05

Location

About this transcript

This transcript has 13 exons, is annotated with 6 domains and features, is associated with 311 variant alleles and maps to 86 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109459.4	smg9-201	1518	505aa	ENSDARP00000103685.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F7F6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000155754.3	smg9-202	2342	414aa	ENSDARP00000128140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WD43	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 13, Coding exons: 11, Transcript length: 2,342 bps, Translation length: 414 residues

Version

ENSDART00000155754.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.