Transcript: ENSDART00000155599.3 zgc:113176-202

Description

zgc:113176 [Source:ZFIN;Acc:ZDB-GENE-050327-60]

Location

About this transcript

This transcript has 13 exons, is annotated with 12 domains and features, is associated with 474 variant alleles and maps to 126 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000155599.3	zgc:113176-202	3132	407aa	ENSDARP00000127980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WCN5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000059255.6	zgc:113176-201	1224	407aa	ENSDARP00000059254.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 13, Coding exons: 11, Transcript length: 3,132 bps, Translation length: 407 residues

Version

ENSDART00000155599.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.