Transcript: ENSDART00000155573.3 si:ch73-306e8.2-204

Description

si:ch73-306e8.2 [Source:ZFIN;Acc:ZDB-GENE-131121-409]

Location

About this transcript

This transcript has 11 exons, is associated with 1320 variant alleles and maps to 50 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000153515.3	si:ch73-306e8.2-201	625	163aa	ENSDARP00000129319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGG4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000153561.2	si:ch73-306e8.2-202	533	145aa	ENSDARP00000128710.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000155573.3	si:ch73-306e8.2-204	1707	89aa	ENSDARP00000128283.1	Nonsense mediated decay	-	-
ENSDART00000155885.3	si:ch73-306e8.2-205	666	89aa	ENSDARP00000129081.1	Nonsense mediated decay	-	-
ENSDART00000153762.2	si:ch73-306e8.2-203	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 11, Coding exons: 6, Transcript length: 1,707 bps, Translation length: 89 residues

Version

ENSDART00000155573.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.