Transcript: ENSDART00000155514.3 KDM5B-201

Description

lysine demethylase 5Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5379]

Location

Chromosome 11: 24,819,624-24,823,279 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 156 variant alleles and maps to 9 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000057093.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000184549.1	KDM5B-203	5677	1478aa	ENSDARP00000156841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9Q713	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000135443.3	KDM5B-202	5330	1477aa	ENSDARP00000122212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WUR6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000155514.3	KDM5B-201	425	85aa	ENSDARP00000127906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 425 bps, Translation length: 85 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000155514.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000155514.3 KDM5B-201

Summary

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Transcript: ENSDART00000155514.3 KDM5B-201

Summary

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