Transcript: ENSDART00000155176.2 si:dkey-28g23.6-201

Description

si:dkey-28g23.6 [Source:ZFIN;Acc:ZDB-GENE-131119-80]

Location

Chromosome 17: 29,216,367-29,224,911 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 87 variant alleles and maps to 294 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000090708.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000156288.3	si:dkey-28g23.6-202	757	190aa	ENSDARP00000129367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000155176.2	si:dkey-28g23.6-201	937	90aa	ENSDARP00000129463.1	Nonsense mediated decay	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 937 bps, Translation length: 90 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000155176.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000155176.2 si:dkey-28g23.6-201

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Transcript: ENSDART00000155176.2 si:dkey-28g23.6-201

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