Transcript: ENSDART00000155137.2 glg1a-203

Description

golgi glycoprotein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6448]

Gene Synonyms

fj98a08, wu:fj98a08

Location

Chromosome 25: 37,221,025-37,223,777 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 148 variant alleles and maps to 130 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000061282.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000087247.6	glg1a-201	4123	1151aa	ENSDARP00000081681.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EXW8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000154045.3	glg1a-202	3968	1130aa	ENSDARP00000129848.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WHY3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000156647.2	glg1a-204	1038	346aa	ENSDARP00000129523.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WH14	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000155137.2	glg1a-203	896	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 896 bps,

Version

ENSDART00000155137.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000155137.2 glg1a-203

Summary

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Transcript: ENSDART00000155137.2 glg1a-203

Summary

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