Transcript: ENSDART00000154999.2 si:dkey-159n16.2-201

Description

si:dkey-159n16.2 [Source:ZFIN;Acc:ZDB-GENE-131121-650]

Location

Chromosome 4: 49,553,972-49,582,108 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 42 domains and features, is associated with 230 variant alleles and maps to 320 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000114577.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000154999.2	si:dkey-159n16.2-201	3937	1233aa	ENSDARP00000129684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000180834.1	si:dkey-159n16.2-203	8820	1038aa	ENSDARP00000152947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000187608.1	si:dkey-159n16.2-204	8706	1000aa	ENSDARP00000150540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000180306.1	si:dkey-159n16.2-202	2724	898aa	ENSDARP00000155734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 3,937 bps, Translation length: 1,233 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000154999.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000154999.2 si:dkey-159n16.2-201

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Transcript: ENSDART00000154999.2 si:dkey-159n16.2-201

Summary

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