Transcript: ENSDART00000154947.2 NGEF-201

Description

neuronal guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-130530-794]

Location

About this transcript

This transcript has 15 exons, is annotated with 24 domains and features, is associated with 1147 variant alleles and maps to 219 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000111018.5	NGEF-202	7324	718aa	ENSDARP00000098684.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FDB4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000154947.2	NGEF-201	5097	577aa	ENSDARP00000128350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WDQ1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 15, Coding exons: 13, Transcript length: 5,097 bps, Translation length: 577 residues

Version

ENSDART00000154947.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.