Transcript: ENSDART00000154878.3 col7a1-202

Description

collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]

Gene Synonyms

col7a1a, fc07e08, wu:fc07e08

Location

About this transcript

This transcript has 118 exons, is annotated with 156 domains and features, is associated with 878 variant alleles and maps to 355 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000154878.3	col7a1-202	10971	3093aa	ENSDARP00000128470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000033844.8	col7a1-201	9282	3093aa	ENSDARP00000029446.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156156.2	col7a1-203	509	160aa	ENSDARP00000129718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 118, Coding exons: 116, Transcript length: 10,971 bps, Translation length: 3,093 residues

Version

ENSDART00000154878.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.