Transcript: ENSDART00000154702.2 MSH4-202

Description

mutS homolog 4 [Source:ZFIN;Acc:ZDB-GENE-131121-643]

Location

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 501 variant alleles and maps to 5 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000156871.3	MSH4-201	3712	931aa	ENSDARP00000127531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179918.1	MSH4-205	2472	823aa	ENSDARP00000145380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000111123.4	MSH4-204	2370	789aa	ENSDARP00000104178.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000154702.2	MSH4-202	541	155aa	ENSDARP00000128074.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000180332.1	MSH4-203	525	174aa	ENSDARP00000155875.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 541 bps, Translation length: 155 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000154702.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.