Transcript: ENSDART00000154649.2 si:ch73-71c20.5-201

Description

si:ch73-71c20.5 [Source:ZFIN;Acc:ZDB-GENE-060810-58]

Location

About this transcript

This transcript has 4 exons, is associated with 232 variant alleles and maps to 151 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000155052.2	si:ch73-71c20.5-203	835	168aa	ENSDARP00000128197.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WDA0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000154649.2	si:ch73-71c20.5-201	1174	57aa	ENSDARP00000127816.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000154743.2	si:ch73-71c20.5-202	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 1,174 bps, Translation length: 57 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000154649.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.