Transcript: ENSDART00000154519.3 NRXN3-204

Description

neurexin 3a [Source:ZFIN;Acc:ZDB-GENE-070206-9]

Location

Chromosome 17: 16,906,523-16,965,809 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 1264 variant alleles and maps to 179 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000043746.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000156928.2	NRXN3-202	4008	1111aa	ENSDARP00000127605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000064241.7	NRXN3-207	3623	672aa	ENSDARP00000064240.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000153697.3	NRXN3-205	2408	469aa	ENSDARP00000127921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000109034.4	NRXN3-208	2099	261aa	ENSDARP00000101280.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000154519.3	NRXN3-204	2987	197aa	ENSDARP00000127538.1	Nonsense mediated decay	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000155341.2	NRXN3-201	776	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000156391.2	NRXN3-203	788	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSDART00000155007.2	NRXN3-206	437	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,987 bps, Translation length: 197 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000154519.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000154519.3 NRXN3-204

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Transcript: ENSDART00000154519.3 NRXN3-204

Summary

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