Transcript: ENSDART00000154462.3 zgc:103625-202

Description

zgc:103625 [Source:ZFIN;Acc:ZDB-GENE-040912-116]

Location

Chromosome 3: 50,069,595-50,075,190 forward strand.

About this transcript

This transcript has 9 exons, is associated with 320 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038770.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000056619.5	zgc:103625-201	825	205aa	ENSDARP00000056618.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184243.1	zgc:103625-204	1154	205aa	ENSDARP00000152946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000154462.3	zgc:103625-202	1083	123aa	ENSDARP00000129357.1	Nonsense mediated decay	-
ENSDART00000154502.2	zgc:103625-203	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 9, Coding exons: 3, Transcript length: 1,083 bps, Translation length: 123 residues

Version

ENSDART00000154462.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000154462.3 zgc:103625-202

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000154462.3 zgc:103625-202

Summary

About Us

Get help

Our sister sites

Follow us