Transcript: ENSDART00000153682.3 si:ch211-40k21.5-201

Description

si:ch211-40k21.5 [Source:ZFIN;Acc:ZDB-GENE-131121-368]

Location

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 652 variant alleles and maps to 28 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000155892.3	si:ch211-40k21.5-203	1013	299aa	ENSDARP00000129788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000154858.2	si:ch211-40k21.5-202	1121	291aa	ENSDARP00000128854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WF50	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000153682.3	si:ch211-40k21.5-201	922	269aa	ENSDARP00000128645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000155916.2	si:ch211-40k21.5-204	427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 922 bps, Translation length: 269 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000153682.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.