Transcript: ENSDART00000153388.2 otofa-203

Description

otoferlin a [Source:NCBI gene (formerly Entrezgene);Acc:557476]

Location

Chromosome 20: 31,206,346-31,208,449 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 291 variant alleles and maps to 34 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000030832.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136255.4	otofa-202	6894	1992aa	ENSDARP00000118166.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WB77	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000008840.9	otofa-201	5979	1992aa	ENSDARP00000007932.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T8F1 Q5SPC5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000153391.2	otofa-204	694	232aa	ENSDARP00000127249.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000153388.2	otofa-203	437	145aa	ENSDARP00000127284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 437 bps, Translation length: 145 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000153388.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000153388.2 otofa-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000153388.2 otofa-203

Summary

About Us

Get help

Our sister sites

Follow us