Transcript: ENSDART00000153314.2 cyth1b-203

Description

cytohesin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4311]

Gene Synonyms

fc89h04, wu:fc89h04, zgc:73134

Location

Chromosome 12: 34,179,988-34,181,434 forward strand.

About this transcript

This transcript has 2 exons, is associated with 170 variant alleles and maps to 6 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000021488.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000032821.9	cyth1b-201	2263	399aa	ENSDARP00000029832.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000180969.1	cyth1b-205	1734	396aa	ENSDARP00000157215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32U2V1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000153413.2	cyth1b-204	615	80aa	ENSDARP00000127275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153276.3	cyth1b-202	602	157aa	ENSDARP00000127375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153314.2	cyth1b-203	806	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 806 bps,

Version

ENSDART00000153314.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000153314.2 cyth1b-203

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Transcript: ENSDART00000153314.2 cyth1b-203

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